Objective To investigate the effects of rt-PA on the prognosis of ultra-acute ischemic stroke, we analyzed the outcome of thrombolytic therapy by IV rt-PA at different doses.Methods 308 cases of ultra-acute ischemic stroke patients were divided by intention into two groups:thrombolytic therapy group and control group. For 221 patients in the thrombolytic therapy group: IV rt-PA were given at different doses: 0.9mg/kg for 92 patients(time window within 3hr in 68 cases, 3 to 4hr in 9 cases and 4 to 6hr in 15 cases) and 0.6-0.8mg/kg for 129 patients(time window within 3hr in 72 cases, 3 to 4hr in 24 cases and 4 to 6hr in 33 cases). The control group consist of 87 patients who were not administered by rt-PA. NIHSS score and Barthel Index were evaluated at baseline,24h after treatment and 90d prospectively. Neurological outcome was categorized as favorable(BI≥95)or unfavorable(BI≥95) at 90d after treatment. Intracranial hemorrhage included symptomatic intracranial hemorrhage(SIH) and asymptomatic intracranial hemorrhage(AIH). Vascular fatal events and re-stroke events were also recorded at the same time during the follow-up periods. Multivariable logistic regression was used to explore the independent prognostic factors.Results The independent factors for good outcome are baseline NIHSS(OR =2.067, 95%CI 1.201-3.556, P =0.009), Cornory Heart disease(OR =1.942, 95%CI 1.040-3.625, P =0.037)and thrombolytic therphy(rtPA 0.9mg/kg, OR =0.414, 95%CI 0.207-0.826, P =0.012; rtPA 0.6-0.8mg/kg,OR =0.261, 95%CI 0.137-0.497, P <0.001). The rate of symptomatic intracranial hemorrhage(SIH)in the thrombolytic therphy group were 3(3.3%) for rtPA 0.9mg/kg and 6(4.7%) for rtPA 0.6-0.8mg/kg. The difference is no significant.Conclusion Using IV rt-PA in ultra-acute ischemic stroke may have a good effect at our study.There is no statistic difference on prognosis between B group(rt-PA 0.6-0.8mg/kg ) and A group(rt-PA 0.9mg/kg). Accompanying history of atrial fibrillation and diabetes may affect prognosis.Thisshould be further studied by more strictly designed RCT.